SNP Profiles of MAN 15 /2 [BRA] View Data

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_Input profile	CC	AA	CG	CC	CT	TT	GT	CT	TT	AA	GG	CT	AA	CT
1._MAN_15_/2_[BRA]	CC	AA	CG	CC	CT	TT	GT	CT	TT	AA	GG	CT	AA	CT
2._MAN_15_/2_[BRA]	CC	AA	CG	CC	CT	TT	GT	CT	TT	AA	GG	CT	AA	CT
3._MAN_15_/2_[BRA]	CC	AA	CG	CC	CT	TT	GT	CT	TT	AA	GG	CT	AA	CT
4._MAN_15_/2_[BRA]	CC	AA	CG	CC	CT	TT	GT	CT	TT	AA	GG	CT	AA	CT
5._GC-05-072-2-23	CC	AA	CG	CC	CT	TT	GT	CT	TT	AA	GG	CT	AA	CT
6._GC-05-072-2-23	CC	AA	CG	CC	CT	TT	GT	CT	TT	AA	GG	CT	AA	CT
7._GC-05-072-2-23	CC	AA	CG	CC	CT	TT	GT	CT	TT	AA	GG	CT	AA	CT
8._GC-05-072-2-23	CC	AA	CG	CC	CT	TT	GT	CT	TT	AA	GG	CT	AA	CT
9._GC-05-072-2-23	CC	AA	CG	CC	CT	TT	GT	CT	TT	AA	GG	CT	AA	CT
10._MAN_15_/2_[BRA]	CC	AA	CG	CC	CT	TT	GT	CT	TT	AA	AG	CT	AA	CT
11._MAN_15_/2_[BRA]	CC	AA	CG	CC	CT	TT	GT	CT	TT	AA	AG	CT	AA	_
12._RUQ_86	CC	AG	CG	CC	CT	TT	GT	CT	TT	AA	AG	CT	AA	CT
13._RUQ_86	_	AA	CG	CC	_	_	-	_	_	_	_	CT	AA	_
14._RUQ_86	_	_	CG	_	_	_	GT	_	TT	_	AG	_	AA	_
15._MAN15/2[BRA]	_	_	CG	_	_	_	_	_	_	_	_	CT	_	CT
16._MAN_15_/2_[BRA]	_	AA	GG	CC	_	TT	TT	CC	_	_	AA	CC	AA	TT
17._RUQ_86	GG	AA	CG	GG	AG	AA	AA	_	_	AA	AG	AG	AA	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	GG	CT	CT	GG	GG	AA	CC	AC	CG	GT	CC	AC	AG
1._MAN_15_/2_[BRA]	AA	GG	CT	CT	GG	GG	AA	CC	AC	CG	GT	CC	AC	AG
2._MAN_15_/2_[BRA]	AA	GG	CT	CT	GG	GG	AA	CC	AC	CG	GT	CC	AC	AG
3._MAN_15_/2_[BRA]	AA	GG	CT	CT	GG	GG	AA	CC	AC	CG	GT	CC	AC	AG
4._MAN_15_/2_[BRA]	AA	GG	CT	CT	GG	GG	AA	CC	AC	CG	GT	CC	AC	AG
5._GC-05-072-2-23	AA	GG	CT	CT	GG	GG	AA	CC	AC	CG	GT	CC	AC	AG
6._GC-05-072-2-23	AA	GG	CT	CT	GG	GG	AA	CC	AC	CG	GT	CC	AC	AG
7._GC-05-072-2-23	AA	GG	CT	CT	GG	GG	AA	CC	AC	CG	GT	CC	AC	AG
8._GC-05-072-2-23	AA	GG	CT	CT	GG	GG	AA	CC	AC	CG	GT	CC	AC	AG
9._GC-05-072-2-23	AA	GG	CT	CT	GG	GG	AA	CC	AC	CG	GT	CC	AC	AG
10._MAN_15_/2_[BRA]	AA	GG	CT	CT	GG	GG	AA	CC	AC	GG	GT	CC	AC	AG
11._MAN_15_/2_[BRA]	AA	GG	CT	CT	GG	GG	AA	CC	AC	GG	GT	CC	AC	AG
12._RUQ_86	AA	GG	CT	CT	GG	GG	AA	CC	AC	GG	GT	CC	AC	AG
13._RUQ_86	_	_	_	TT	GG	GG	_	CC	AC	CG	GT	CC	AC	AG
14._RUQ_86	_	_	_	_	GG	GG	AA	_	AC	GG	_	_	AC	_
15._MAN15/2[BRA]	_	_	_	CT	CC	_	_	_	AC	CG	_	_	_	_
16._MAN_15_/2_[BRA]	AA	GG	TT	CC	GG	GG	AA	CT	AA	CG	TT	CT	CC	AA
17._RUQ_86	AA	GG	AG	AG	CC	CC	_	GG	AC	CG	AC	_	AC	_

	29	30	31	32	33	34	35	36	37	38	39
_Input profile	GG	AA	TT	AA	CG	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X
1._MAN_15_/2_[BRA]	GG	AA	TT	AA	CG	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X
2._MAN_15_/2_[BRA]	GG	AA	TT	AA	CG	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X
3._MAN_15_/2_[BRA]	GG	AA	TT	AA	CG	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X
4._MAN_15_/2_[BRA]	GG	AA	TT	AA	CG	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X
5._GC-05-072-2-23	GG	AA	TT	AA	CG	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X
6._GC-05-072-2-23	GG	AA	TT	AA	CG	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X
7._GC-05-072-2-23	GG	AA	TT	AA	CG	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X
8._GC-05-072-2-23	GG	AA	TT	AA	CG	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X
9._GC-05-072-2-23	GG	AA	TT	AA	CG	AA	CC	GT	CC	AT	GG	X_X	X_X	X_X
10._MAN_15_/2_[BRA]	GG	AA	TT	AG	CG	AC	CT	GT	CC	AT	GG	X_X	X_X	X_X
11._MAN_15_/2_[BRA]	GG	AA	TT	AG	CG	AC	CT	GT	CC	AT	GG	X_X	X_X	X_X
12._RUQ_86	GG	AA	TT	AG	CG	AC	CT	GT	CC	AT	GG	X_X	X_X	X_X
13._RUQ_86	_	AA	TT	AG	CG	AC	CT	GT	CC	_	_	X_X	X_X	X_X
14._RUQ_86	_	_	_	AG	_	_	_	_	CC	_	_	X_X	X_X	X_X
15._MAN15/2[BRA]	_	AA	_	AG	CG	AC	CT	_	CC	_	_	X_X	X_X	X_X
16._MAN_15_/2_[BRA]	GG	AA	CC	GG	CG	AC	CT	GG	CC	TT	GG	X_X	X_X	X_X
17._RUQ_86	GG	AA	AA	AG	CG	AC	AG	AC	CC	AT	GG	X_X	X_X	X_X

Input profile: MAN_15_/2_[BRA]

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Mars Center for Cocoa Science, Brazil

Location: 5223 4

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

1._MAN_15_/2_[BRA]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 5 > FP

Dapeng Zhang, 2016

2._MAN_15_/2_[BRA]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 3 > FP

Dapeng Zhang, 2016

3._MAN_15_/2_[BRA]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 2 > FP

Dapeng Zhang, 2016

4._MAN_15_/2_[BRA]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5223 1 > FP

Dapeng Zhang, 2016

5._MAN_15_/2_[BRA] GC-05-072-2-23

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

6._MAN_15_/2_[BRA] GC-05-072-2-23

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

7._MAN_15_/2_[BRA] GC-05-072-2-23

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

8._MAN_15_/2_[BRA] GC-05-072-2-23

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

9._MAN_15_/2_[BRA] GC-05-072-2-23

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

10._MAN_15_/2_[BRA]

93.6 %
39 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0297

Dapeng Zhang, 2016

11._MAN_15_/2_[BRA]

93.4 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5A N3/476 T2

Dapeng Zhang, 2016

12._MAN_15_/2_[BRA] RUQ_86

92.3 %
39 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Dapeng Zhang, 2016

13._MAN_15_/2_[BRA] RUQ_86

91.3 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

14._MAN_15_/2_[BRA] RUQ_86

88.5 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

15._MAN_15_/2_[BRA] MAN15/2[BRA]

80.8 %
13 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

16._MAN_15_/2_[BRA]

67.1 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: La Montaña Lot 6 Row 53 46-48

Dapeng Zhang, 2016

17._MAN_15_/2_[BRA] RUQ_86

48.5 %
34 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1270	7	TcSNP1253	8	TcSNP1165	9	TcSNP1144	10	TcSNP1075
11	TcSNP1062	12	TcSNP1060	13	TcSNP998	14	TcSNP994	15	TcSNP953
16	TcSNP929	17	TcSNP917	18	TcSNP891	19	TcSNP872	20	TcSNP723
21	TcSNP645	22	TcSNP619	23	TcSNP591	24	TcSNP577	25	TcSNP560
26	TcSNP534	27	TcSNP529	28	TcSNP469	29	TcSNP429	30	TcSNP372
31	TcSNP242	32	TcSNP230	33	TcSNP226	34	TcSNP193	35	TcSNP151
36	TcSNP150	37	TcSNP144	38	TcSNP32	39	TcSNP25